Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 570515..571122 Replicon chromosome
Accession NZ_CP124967
Organism Agrobacterium tumefaciens strain O54/95

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag G6L90_RS02825 Protein ID WP_020811443.1
Coordinates 570515..570802 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A822V573
Locus tag G6L90_RS02830 Protein ID WP_020811442.1
Coordinates 570847..571122 (-) Length 92 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G6L90_RS02810 (G6L90_02810) 566568..568760 - 2193 WP_003509229.1 transglycosylase domain-containing protein -
G6L90_RS02815 (G6L90_02815) 569015..569494 + 480 WP_003509227.1 YcgN family cysteine cluster protein -
G6L90_RS02820 (G6L90_02820) 569663..570487 + 825 WP_003509224.1 class D beta-lactamase -
G6L90_RS02825 (G6L90_02825) 570515..570802 - 288 WP_020811443.1 type II toxin-antitoxin system YafQ family toxin Toxin
G6L90_RS02830 (G6L90_02830) 570847..571122 - 276 WP_020811442.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
G6L90_RS02835 (G6L90_02835) 571336..573915 + 2580 WP_174069514.1 heavy metal translocating P-type ATPase -
G6L90_RS02840 (G6L90_02840) 573912..574334 + 423 WP_003509219.1 Cu(I)-responsive transcriptional regulator -
G6L90_RS02845 (G6L90_02845) 574387..574587 + 201 WP_060723954.1 heavy-metal-associated domain-containing protein -
G6L90_RS02850 (G6L90_02850) 574664..574933 + 270 WP_003509217.1 type II toxin-antitoxin system ParD family antitoxin -
G6L90_RS02855 (G6L90_02855) 574923..575288 + 366 WP_060726102.1 hypothetical protein -
G6L90_RS02860 (G6L90_02860) 575285..575533 - 249 WP_162690375.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(6-95)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11264.90 Da        Isoelectric Point: 6.9783

>T281859 WP_020811443.1 NZ_CP124967:c570802-570515 [Agrobacterium tumefaciens]
VLPRSSDFTRQFIKDWQRLNNSGRYDMVKLKEIMLLLIANEAPLPAQFRDHELTGEWHDHRECHVGGDFLLIYKLDEKQN
LLIFTRAGTHAELFR

Download         Length: 288 bp

Antitoxin


Download         Length: 92 a.a.        Molecular weight: 9930.42 Da        Isoelectric Point: 8.6855

>AT281859 WP_020811442.1 NZ_CP124967:c571122-570847 [Agrobacterium tumefaciens]
MTANAYVRARIDQALKDDATAVLDSLGLTVSDVMRMMLTRIAREKALPIELTQPNAETLAAIEEARAIAAARRNRFGTAQ
ALFDALDGNKR

Download         Length: 276 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A822V573

References