Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2878922..2879076 | Replicon | chromosome |
| Accession | NC_018405 | ||
| Organism | Enterobacter cloacae subsp. cloacae ENHKU01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2878938..2879041 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2878922..2879076 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECENHK_RS13700 | 2875199..2876641 | + | 1443 | WP_014884296.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECENHK_RS13705 | 2876747..2876986 | + | 240 | WP_008500472.1 | YebV family protein | - |
| ECENHK_RS13710 | 2877021..2877665 | - | 645 | WP_014884297.1 | protein-serine/threonine phosphatase | - |
| ECENHK_RS13715 | 2877833..2878774 | + | 942 | WP_014884298.1 | VirK/YbjX family protein | - |
| - | 2878922..2879076 | + | 155 | - | - | Antitoxin |
| - | 2878938..2879041 | - | 104 | - | - | Toxin |
| ECENHK_RS13720 | 2879180..2879518 | - | 339 | WP_014884299.1 | YebY family protein | - |
| ECENHK_RS13725 | 2879535..2880404 | - | 870 | WP_014884300.1 | copper homeostasis membrane protein CopD | - |
| ECENHK_RS13730 | 2880406..2880777 | - | 372 | WP_014884301.1 | CopC domain-containing protein YobA | - |
| ECENHK_RS13735 | 2880915..2881145 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| ECENHK_RS13740 | 2881256..2881906 | + | 651 | WP_014884302.1 | carbon-nitrogen hydrolase family protein | - |
| ECENHK_RS13745 | 2881931..2882593 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T28151 NC_018405:c2879041-2878938 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT28151 NC_018405:2878922-2879076 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
