Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 1172247..1172789 Replicon chromosome
Accession NZ_CP124855
Organism Chryseobacterium sp. wcd7

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag QGN23_RS05340 Protein ID WP_282905970.1
Coordinates 1172538..1172789 (-) Length 84 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QGN23_RS05335 Protein ID WP_282905969.1
Coordinates 1172247..1172531 (-) Length 95 a.a.

Genomic Context

QGN23_RS05315QGN23_RS05320QGN23_RS05325QGN23_RS05330QGN23_RS05335QGN23_RS05340QGN23_RS05345QGN23_RS05350QGN23_RS05355
Location: 1167597..1168961 (1365 bp)
Type: Others
Protein ID: WP_282905965.1
Location: 1168961..1169314 (354 bp)
Type: Others
Protein ID: WP_282905966.1
Location: 1169298..1170083 (786 bp)
Type: Others
Protein ID: WP_282905967.1
Location: 1170154..1172091 (1938 bp)
Type: Others
Protein ID: WP_282905968.1
Location: 1172247..1172531 (285 bp)
Type: Antitoxin
Protein ID: WP_282905969.1
Location: 1172538..1172789 (252 bp)
Type: Toxin
Protein ID: WP_282905970.1
Location: 1173158..1174549 (1392 bp)
Type: Others
Protein ID: WP_282905971.1
Location: 1174923..1175588 (666 bp)
Type: Others
Protein ID: WP_282905972.1
Location: 1175589..1175777 (189 bp)
Type: Others
Protein ID: WP_282905973.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QGN23_RS05315 (QGN23_05315)1167597..1168961+1365WP_282905965.1M20/M25/M40 family metallo-hydrolase-
QGN23_RS05320 (QGN23_05320)1168961..1169314+354WP_282905966.1diacylglycerol kinase family protein-
QGN23_RS05325 (QGN23_05325)1169298..1170083-786WP_282905967.1patatin-like phospholipase family protein-
QGN23_RS05330 (QGN23_05330)1170154..1172091-1938WP_282905968.1alpha/beta fold hydrolase-
QGN23_RS05335 (QGN23_05335)1172247..1172531-285WP_282905969.1putative addiction module antidote proteinAntitoxin
QGN23_RS05340 (QGN23_05340)1172538..1172789-252WP_282905970.1type II toxin-antitoxin system RelE/ParE family toxinToxin
QGN23_RS05345 (QGN23_05345)1173158..1174549-1392WP_282905971.1dihydrolipoyl dehydrogenase-
QGN23_RS05350 (QGN23_05350)1174923..1175588-666WP_282905972.1response regulator-
QGN23_RS05355 (QGN23_05355)1175589..1175777-189WP_282905973.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(1-82)

Antitoxin

Uncharacterized protein HI1420

(3-89)


Sequences

Toxin        


Download         Length: 84 a.a.        Molecular weight: 9655.46 Da        Isoelectric Point: 10.4153

>T281351 WP_282905970.1 NZ_CP124855:c1172789-1172538 [Chryseobacterium sp. wcd7]
MKDVTAKAKILFRIQKLENDEHLGDFKPVGNGINKLKFNYAKGYRIYFMEIDGKIIILLIGGDKSTQQKDIEKAKEIWKK
LKK

Download         Length: 252 bp

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 9980.41 Da        Isoelectric Point: 4.7616

>AT281351 WP_282905969.1 NZ_CP124855:c1172531-1172247 [Chryseobacterium sp. wcd7]
MNTSKFDIADYLDSNEMIAEYLNAALEEGNESEIIAAIGNVAKAIGMTKIAEETGLSRPSLYKALSEGAKPQFATIMKVL
KAVGGHIHINPATA

Download         Length: 285 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References