Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2034591..2034736 | Replicon | chromosome |
| Accession | NZ_CP124837 | ||
| Organism | Klebsiella pneumoniae strain KPN6328 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2034627..2034729 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2034591..2034736 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QHR28_RS09990 (QHR28_09990) | 2029721..2031781 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QHR28_RS09995 (QHR28_09995) | 2031785..2032444 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QHR28_RS10000 (QHR28_10000) | 2032523..2032753 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QHR28_RS10005 (QHR28_10005) | 2032866..2033240 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QHR28_RS10010 (QHR28_10010) | 2033244..2034113 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| QHR28_RS10015 (QHR28_10015) | 2034130..2034468 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2034591..2034736 | - | 146 | - | - | Antitoxin |
| - | 2034627..2034729 | + | 103 | - | - | Toxin |
| QHR28_RS10020 (QHR28_10020) | 2035104..2035247 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QHR28_RS10025 (QHR28_10025) | 2035352..2036320 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QHR28_RS10030 (QHR28_10030) | 2036477..2037130 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QHR28_RS10035 (QHR28_10035) | 2037127..2037318 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QHR28_RS10040 (QHR28_10040) | 2037416..2037655 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QHR28_RS10045 (QHR28_10045) | 2037771..2039204 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T281332 NZ_CP124837:2034627-2034729 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT281332 NZ_CP124837:c2034736-2034591 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
