Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1928990..1929134 | Replicon | chromosome |
| Accession | NZ_CP124827 | ||
| Organism | Klebsiella pneumoniae strain K147 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1929026..1929128 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1928990..1929134 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLG19_RS09335 (QLG19_09335) | 1924120..1926180 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QLG19_RS09340 (QLG19_09340) | 1926184..1926843 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QLG19_RS09345 (QLG19_09345) | 1926922..1927152 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QLG19_RS09350 (QLG19_09350) | 1927265..1927639 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QLG19_RS09355 (QLG19_09355) | 1927643..1928512 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| QLG19_RS09360 (QLG19_09360) | 1928529..1928867 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1928990..1929134 | - | 145 | - | - | Antitoxin |
| - | 1929026..1929128 | + | 103 | - | - | Toxin |
| QLG19_RS09365 (QLG19_09365) | 1929261..1929542 | - | 282 | Protein_1828 | tyrosine-type recombinase/integrase | - |
| QLG19_RS09370 (QLG19_09370) | 1929619..1930098 | + | 480 | WP_032419797.1 | lysis protein | - |
| QLG19_RS09375 (QLG19_09375) | 1930553..1930748 | + | 196 | Protein_1830 | DNA polymerase V | - |
| QLG19_RS09380 (QLG19_09380) | 1930887..1932392 | + | 1506 | WP_020956680.1 | hypothetical protein | - |
| QLG19_RS09385 (QLG19_09385) | 1932642..1933070 | - | 429 | WP_032419788.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QLG19_RS09390 (QLG19_09390) | 1933080..1933361 | - | 282 | WP_032419786.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T281316 NZ_CP124827:1929026-1929128 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT281316 NZ_CP124827:c1929134-1928990 [Klebsiella pneumoniae]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
