Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1316275..1316543 | Replicon | chromosome |
| Accession | NZ_CP124819 | ||
| Organism | Escherichia coli strain C325 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1316313..1316416 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1316275..1316543 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLG17_RS06880 | 1313432..1314871 | + | 1440 | WP_024221588.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QLG17_RS06885 | 1314989..1315225 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QLG17_RS06890 | 1315330..1315521 | + | 192 | WP_001313035.1 | YebW family protein | - |
| QLG17_RS06895 | 1315522..1316178 | - | 657 | WP_000812714.1 | protein-serine/threonine phosphatase | - |
| - | 1316275..1316543 | + | 269 | - | - | Antitoxin |
| - | 1316313..1316416 | - | 104 | - | - | Toxin |
| QLG17_RS06900 | 1316573..1316914 | - | 342 | WP_000976475.1 | YebY family protein | - |
| QLG17_RS06905 | 1316927..1317799 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QLG17_RS06910 | 1317803..1318177 | - | 375 | WP_052915176.1 | CopC domain-containing protein YobA | - |
| QLG17_RS06915 | 1318316..1318546 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QLG17_RS06920 | 1318648..1319304 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QLG17_RS06925 | 1319328..1319990 | + | 663 | WP_000944252.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T281270 NZ_CP124819:c1316416-1316313 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT281270 NZ_CP124819:1316275-1316543 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
