Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2813706..2813849 | Replicon | chromosome |
| Accession | NZ_CP124813 | ||
| Organism | Citrobacter freundii strain CF12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2813711..2813814 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2813706..2813849 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLG15_RS13620 | 2810863..2812284 | + | 1422 | WP_282624885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QLG15_RS13625 | 2812385..2812621 | + | 237 | WP_029139506.1 | YebV family protein | - |
| QLG15_RS13630 | 2812724..2812915 | + | 192 | WP_003034941.1 | YebW family protein | - |
| QLG15_RS13635 | 2812916..2813557 | - | 642 | WP_282624886.1 | protein-serine/threonine phosphatase | - |
| - | 2813706..2813849 | + | 144 | - | - | Antitoxin |
| - | 2813711..2813814 | - | 104 | - | - | Toxin |
| QLG15_RS13640 | 2813970..2814308 | - | 339 | WP_061548576.1 | YebY family protein | - |
| QLG15_RS13645 | 2814329..2815201 | - | 873 | WP_282624890.1 | copper homeostasis membrane protein CopD | - |
| QLG15_RS13650 | 2815205..2815579 | - | 375 | WP_282624892.1 | CopC domain-containing protein YobA | - |
| QLG15_RS13655 | 2815723..2815953 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| QLG15_RS13660 | 2816060..2816716 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| QLG15_RS13665 | 2816740..2817402 | + | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T281259 NZ_CP124813:c2813814-2813711 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT281259 NZ_CP124813:2813706-2813849 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
