Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966744..1966884 | Replicon | chromosome |
| Accession | NZ_CP124750 | ||
| Organism | Serratia sp. K-M0706 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966788..1966884 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966744..1966884 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSARUM_RS09360 (SSARUM_001872) | 1961935..1962360 | + | 426 | WP_033638066.1 | RNA polymerase-binding protein DksA | - |
| SSARUM_RS09365 (SSARUM_001873) | 1962563..1963516 | + | 954 | WP_033646426.1 | prolyl aminopeptidase | - |
| SSARUM_RS09370 (SSARUM_001874) | 1963548..1963778 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| SSARUM_RS09375 (SSARUM_001875) | 1964124..1964642 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| SSARUM_RS09380 (SSARUM_001876) | 1964968..1965351 | + | 384 | WP_060429883.1 | copper homeostasis periplasmic binding protein CopC | - |
| SSARUM_RS09385 (SSARUM_001877) | 1965354..1966235 | + | 882 | WP_060418439.1 | copper homeostasis membrane protein CopD | - |
| SSARUM_RS09390 (SSARUM_001878) | 1966305..1966646 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 1966744..1966884 | - | 141 | - | - | Antitoxin |
| - | 1966788..1966884 | + | 97 | - | - | Toxin |
| SSARUM_RS09395 (SSARUM_001879) | 1967134..1967541 | + | 408 | WP_230118415.1 | hypothetical protein | - |
| SSARUM_RS09400 (SSARUM_001880) | 1967538..1967756 | - | 219 | WP_033638114.1 | hypothetical protein | - |
| SSARUM_RS09405 (SSARUM_001881) | 1967830..1968174 | - | 345 | WP_033638115.1 | hypothetical protein | - |
| SSARUM_RS09410 (SSARUM_001882) | 1968466..1968816 | + | 351 | WP_033638116.1 | DUF4377 domain-containing protein | - |
| SSARUM_RS09415 (SSARUM_001883) | 1969000..1970199 | + | 1200 | WP_060429885.1 | trans-2-enoyl-CoA reductase family protein | - |
| SSARUM_RS09420 (SSARUM_001884) | 1970427..1970645 | + | 219 | WP_033646423.1 | hypothetical protein | - |
| SSARUM_RS09425 (SSARUM_001885) | 1970817..1971122 | + | 306 | WP_033646422.1 | hypothetical protein | - |
| SSARUM_RS09430 (SSARUM_001886) | 1971166..1971501 | + | 336 | WP_033638120.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T281193 NZ_CP124750:1966788-1966884 [Serratia sp. K-M0706]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT281193 NZ_CP124750:c1966884-1966744 [Serratia sp. K-M0706]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
