Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4848717..4848988 | Replicon | chromosome |
| Accession | NZ_CP124740 | ||
| Organism | Escherichia coli O157:H7 str. EDL933 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4848847..4848950 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4848717..4848988 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QI555_RS23970 | 4845272..4845934 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| QI555_RS23975 | 4845958..4846614 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QI555_RS23980 | 4846716..4846946 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QI555_RS23985 | 4847085..4847459 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| QI555_RS23990 | 4847463..4848335 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| QI555_RS23995 | 4848348..4848689 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 4848717..4848988 | - | 272 | - | - | Antitoxin |
| - | 4848847..4848950 | + | 104 | - | - | Toxin |
| QI555_RS24000 | 4849085..4849741 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| QI555_RS24005 | 4849742..4849933 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QI555_RS24010 | 4850038..4850274 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QI555_RS24015 | 4850392..4851831 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T281166 NZ_CP124740:4848847-4848950 [Escherichia coli O157:H7 str. EDL933]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT281166 NZ_CP124740:c4848988-4848717 [Escherichia coli O157:H7 str. EDL933]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
