Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 1337864..1338383 Replicon chromosome
Accession NZ_CP124733
Organism Agrobacterium larrymoorei strain CFBP5477

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CFBP5477_RS06295 Protein ID WP_137394136.1
Coordinates 1338102..1338383 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CFBP5477_RS06290 Protein ID WP_137394135.1
Coordinates 1337864..1338112 (+) Length 83 a.a.

Genomic Context

CFBP5477_RS06285CFBP5477_RS06290CFBP5477_RS06295CFBP5477_RS06300CFBP5477_RS06275CFBP5477_RS06280CFBP5477_RS06305CFBP5477_RS06310CFBP5477_RS06315CFBP5477_RS06320CFBP5477_RS06325
Location: 1337383..1337736 (354 bp)
Type: Others
Protein ID: WP_027676067.1
Location: 1337864..1338112 (249 bp)
Type: Antitoxin
Protein ID: WP_137394135.1
Location: 1338102..1338383 (282 bp)
Type: Toxin
Protein ID: WP_137394136.1
Location: 1338388..1338849 (462 bp)
Type: Others
Protein ID: WP_234882881.1
Location: 1333866..1336916 (3051 bp)
Type: Others
Protein ID: WP_137394133.1
Location: 1336962..1337450 (489 bp)
Type: Others
Protein ID: WP_170980186.1
Location: 1338989..1339414 (426 bp)
Type: Others
Protein ID: WP_137394206.1
Location: 1339469..1339864 (396 bp)
Type: Others
Protein ID: WP_137394137.1
Location: 1339888..1340223 (336 bp)
Type: Others
Protein ID: WP_234882883.1
Location: 1340482..1341924 (1443 bp)
Type: Others
Protein ID: WP_137394138.1
Location: 1342010..1342414 (405 bp)
Type: Others
Protein ID: WP_137394139.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CFBP5477_RS06275 (CFBP5477_006275)1333866..1336916-3051WP_137394133.1excinuclease ABC subunit UvrB-
CFBP5477_RS06280 (CFBP5477_006280)1336962..1337450-489WP_170980186.1hypothetical protein-
CFBP5477_RS06285 (CFBP5477_006285)1337383..1337736+354WP_027676067.1DMT family protein-
CFBP5477_RS06290 (CFBP5477_006290)1337864..1338112+249WP_137394135.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
CFBP5477_RS06295 (CFBP5477_006295)1338102..1338383+282WP_137394136.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CFBP5477_RS06300 (CFBP5477_006300)1338388..1338849+462WP_234882881.1GNAT family N-acetyltransferase-
CFBP5477_RS06305 (CFBP5477_006305)1338989..1339414-426WP_137394206.1MarR family transcriptional regulator-
CFBP5477_RS06310 (CFBP5477_006310)1339469..1339864-396WP_137394137.1multidrug efflux SMR transporter-
CFBP5477_RS06315 (CFBP5477_006315)1339888..1340223-336WP_234882883.1multidrug efflux SMR transporter-
CFBP5477_RS06320 (CFBP5477_006320)1340482..1341924-1443WP_137394138.1PepSY domain-containing protein-
CFBP5477_RS06325 (CFBP5477_006325)1342010..1342414-405WP_137394139.1DUF2946 domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideGenomic island--1331009..13402089199


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(9-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10805.59 Da        Isoelectric Point: 10.6956

>T281138 WP_137394136.1 NZ_CP124733:1338102-1338383 [Agrobacterium larrymoorei]
MSYELGFVDAALKEWRKLDSNTQEQFKKKLAERLVNPRVPAAKLSGHSDRYKIKLRGAGYRLVYEVRDKEVLVLVVAVGR
RDRDQVYKLAAKR

Download         Length: 282 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 8845.12 Da        Isoelectric Point: 4.2404

>AT281138 WP_137394135.1 NZ_CP124733:1337864-1338112 [Agrobacterium larrymoorei]
MAHVVLAEMTASVSELKKNPMGTVAAGDGAPVAILNRNEPAFYCVPAKAYEAMMERLDDIELNAIADSRADQPVTRVQLD
EL

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References