Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 1021469..1022083 Replicon chromosome
Accession NZ_CP124733
Organism Agrobacterium larrymoorei strain CFBP5477

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CFBP5477_RS04835 Protein ID WP_137393917.1
Coordinates 1021832..1022083 (-) Length 84 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CFBP5477_RS04830 Protein ID WP_137393916.1
Coordinates 1021469..1021822 (-) Length 118 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CFBP5477_RS04805 (CFBP5477_004805) 1016652..1017617 - 966 WP_027674214.1 metallophosphoesterase -
CFBP5477_RS04810 (CFBP5477_004810) 1017782..1018192 + 411 WP_137394062.1 NUDIX domain-containing protein -
CFBP5477_RS04815 (CFBP5477_004815) 1018202..1019194 - 993 WP_137393913.1 glutathione S-transferase family protein -
CFBP5477_RS04820 (CFBP5477_004820) 1019482..1020051 + 570 WP_137393914.1 N-acetyltransferase -
CFBP5477_RS04825 (CFBP5477_004825) 1020149..1021462 + 1314 WP_137393915.1 MFS transporter -
CFBP5477_RS04830 (CFBP5477_004830) 1021469..1021822 - 354 WP_137393916.1 helix-turn-helix transcriptional regulator Antitoxin
CFBP5477_RS04835 (CFBP5477_004835) 1021832..1022083 - 252 WP_137393917.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CFBP5477_RS04840 (CFBP5477_004840) 1022132..1022569 - 438 WP_137393918.1 GNAT family N-acetyltransferase -
CFBP5477_RS04845 (CFBP5477_004845) 1022573..1024654 - 2082 WP_137393919.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(62-116)


Sequences

Toxin        


Download         Length: 84 a.a.        Molecular weight: 9307.84 Da        Isoelectric Point: 10.4524

>T281137 WP_137393917.1 NZ_CP124733:c1022083-1021832 [Agrobacterium larrymoorei]
MKKIAYSKSSIKVLRRLPANEAKRIISKIEQYASDPDSLANNVKALVGSPYIRLRVGDWRVIMDDNGNILEIVNIGPRGG
IYH

Download         Length: 252 bp

Antitoxin


Download         Length: 118 a.a.        Molecular weight: 12398.12 Da        Isoelectric Point: 4.2439

>AT281137 WP_137393916.1 NZ_CP124733:c1021822-1021469 [Agrobacterium larrymoorei]
MQTITTPNGETLVVLPLAEYESLIDQADIAAADKVKADIAAGRDELVPSEIVERLISGENPVKVWRSHRGLSAKALAAEA
GISAPYLSEIEGGKKEGSLSVMKKIAEVLDVDLDDLA

Download         Length: 354 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References