Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 1013995..1014487 Replicon chromosome
Accession NZ_CP124733
Organism Agrobacterium larrymoorei strain CFBP5477

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag CFBP5477_RS04790 Protein ID WP_137393910.1
Coordinates 1013995..1014264 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag CFBP5477_RS04795 Protein ID WP_137393911.1
Coordinates 1014245..1014487 (+) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CFBP5477_RS04780 (CFBP5477_004780) 1012006..1012692 + 687 WP_170980174.1 DUF930 domain-containing protein -
CFBP5477_RS04785 (CFBP5477_004785) 1012795..1013982 + 1188 WP_137393909.1 benzoate/H(+) symporter BenE family transporter -
CFBP5477_RS04790 (CFBP5477_004790) 1013995..1014264 + 270 WP_137393910.1 BrnT family toxin Toxin
CFBP5477_RS04795 (CFBP5477_004795) 1014245..1014487 + 243 WP_137393911.1 CopG family transcriptional regulator Antitoxin
CFBP5477_RS04800 (CFBP5477_004800) 1014806..1016512 + 1707 WP_137393912.1 2-isopropylmalate synthase -
CFBP5477_RS04805 (CFBP5477_004805) 1016652..1017617 - 966 WP_027674214.1 metallophosphoesterase -
CFBP5477_RS04810 (CFBP5477_004810) 1017782..1018192 + 411 WP_137394062.1 NUDIX domain-containing protein -
CFBP5477_RS04815 (CFBP5477_004815) 1018202..1019194 - 993 WP_137393913.1 glutathione S-transferase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(5-80)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10682.14 Da        Isoelectric Point: 8.0552

>T281136 WP_137393910.1 NZ_CP124733:1013995-1014264 [Agrobacterium larrymoorei]
MEFEFDPAKSASNKDKHGIDFVDAQNLWLDQRRLIAPLVMEGEERYIMIARLHDKIWSTIFTYRGGRVRIISVRRARDKE
RQHYENDQC

Download         Length: 270 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9135.15 Da        Isoelectric Point: 4.4335

>AT281136 WP_137393911.1 NZ_CP124733:1014245-1014487 [Agrobacterium larrymoorei]
MKTISAEEFDRRFDDGEDVSDHIDWSQAVRPGVEIEHVEVDLPKWLLRKVDAEASRLGTTRQSLLAEWITEKLGGDQPSK

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References