Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1920013..1920158 | Replicon | chromosome |
| Accession | NZ_CP124702 | ||
| Organism | Klebsiella pneumoniae strain KP21315 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1920049..1920151 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1920013..1920158 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJQ34_RS09440 | 1915143..1917203 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QJQ34_RS09445 | 1917207..1917866 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QJQ34_RS09450 | 1917945..1918175 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QJQ34_RS09455 | 1918288..1918662 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QJQ34_RS09460 | 1918666..1919535 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| QJQ34_RS09465 | 1919552..1919890 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1920013..1920158 | - | 146 | - | - | Antitoxin |
| - | 1920049..1920151 | + | 103 | - | - | Toxin |
| QJQ34_RS09470 | 1920527..1920670 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QJQ34_RS09475 | 1920775..1921743 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QJQ34_RS09480 | 1921900..1922553 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| QJQ34_RS09485 | 1922550..1922741 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QJQ34_RS09490 | 1922839..1923078 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QJQ34_RS09495 | 1923194..1924627 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T281106 NZ_CP124702:1920049-1920151 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT281106 NZ_CP124702:c1920158-1920013 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
