Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1999861..2000006 | Replicon | chromosome |
| Accession | NZ_CP124698 | ||
| Organism | Klebsiella pneumoniae strain KP21317 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1999897..1999999 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1999861..2000006 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJQ33_RS09705 | 1994991..1997051 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QJQ33_RS09710 | 1997055..1997714 | - | 660 | WP_004180433.1 | exodeoxyribonuclease X | - |
| QJQ33_RS09715 | 1997793..1998023 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QJQ33_RS09720 | 1998136..1998510 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QJQ33_RS09725 | 1998514..1999383 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| QJQ33_RS09730 | 1999400..1999738 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1999861..2000006 | - | 146 | - | - | Antitoxin |
| - | 1999897..1999999 | + | 103 | - | - | Toxin |
| QJQ33_RS09735 | 2000375..2000518 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QJQ33_RS09740 | 2000623..2001591 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QJQ33_RS09745 | 2001748..2002401 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QJQ33_RS09750 | 2002398..2002589 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QJQ33_RS09755 | 2002687..2002926 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QJQ33_RS09760 | 2003042..2004475 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T281088 NZ_CP124698:1999897-1999999 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT281088 NZ_CP124698:c2000006-1999861 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
