Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1903847..1903992 | Replicon | chromosome |
| Accession | NZ_CP124693 | ||
| Organism | Klebsiella pneumoniae strain KP21300 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1903883..1903985 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1903847..1903992 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJQ26_RS09340 | 1898977..1901037 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QJQ26_RS09345 | 1901041..1901700 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QJQ26_RS09350 | 1901779..1902009 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QJQ26_RS09355 | 1902122..1902496 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QJQ26_RS09360 | 1902500..1903369 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| QJQ26_RS09365 | 1903386..1903724 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1903847..1903992 | - | 146 | - | - | Antitoxin |
| - | 1903883..1903985 | + | 103 | - | - | Toxin |
| QJQ26_RS09370 | 1904360..1904503 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QJQ26_RS09375 | 1904608..1905576 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QJQ26_RS09380 | 1905733..1906386 | + | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| QJQ26_RS09385 | 1906383..1906574 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QJQ26_RS09390 | 1906672..1906911 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QJQ26_RS09395 | 1907027..1908460 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T281072 NZ_CP124693:1903883-1903985 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT281072 NZ_CP124693:c1903992-1903847 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
