281035

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 3594669..3595889 Replicon chromosome
Accession NZ_CP124666
Organism Pseudomonas aeruginosa strain 2021CK-01283

Toxin (Protein)


Gene name vapC Uniprot ID A0A0H2Z8V4
Locus tag QJ983_RS16690 Protein ID WP_003110488.1
Coordinates 3595311..3595889 (+) Length 193 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QJ983_RS16685 Protein ID WP_003132728.1
Coordinates 3594669..3595223 (+) Length 185 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJ983_RS16660 (QJ983_16660) 3590237..3590788 + 552 WP_031685890.1 XRE family transcriptional regulator -
QJ983_RS16665 (QJ983_16665) 3590785..3591183 - 399 WP_003088123.1 NADH-quinone oxidoreductase subunit A -
QJ983_RS16670 (QJ983_16670) 3591196..3591519 - 324 WP_003102734.1 multidrug efflux SMR transporter -
QJ983_RS16675 (QJ983_16675) 3591850..3592311 + 462 WP_003102736.1 (2Fe-2S)-binding protein -
QJ983_RS16680 (QJ983_16680) 3592316..3594511 + 2196 WP_033957494.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
QJ983_RS16685 (QJ983_16685) 3594669..3595223 + 555 WP_003132728.1 helix-turn-helix transcriptional regulator Antitoxin
QJ983_RS16690 (QJ983_16690) 3595311..3595889 + 579 WP_003110488.1 HD domain-containing protein Toxin
QJ983_RS16695 (QJ983_16695) 3595999..3597186 - 1188 WP_003110489.1 HlyD family efflux transporter periplasmic adaptor subunit -
QJ983_RS16700 (QJ983_16700) 3597176..3599347 - 2172 WP_033957491.1 type I secretion system permease/ATPase -
QJ983_RS16705 (QJ983_16705) 3599337..3600614 - 1278 WP_003088104.1 TolC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

5'-deoxynucleotidase YfbR/HDDC2

(7-188)

Antitoxin

Cro/C1-type helix-turn-helix domain

(14-62)


Sequences

Toxin        


Download         Length: 193 a.a.        Molecular weight: 21913.75 Da        Isoelectric Point: 5.3655

>T281035 WP_003110488.1 NZ_CP124666:3595311-3595889 [Pseudomonas aeruginosa]
MSLELLSNRLEFLREAERLKDVLRSAHTSSGRPESTAEHSWRLCLMALAFEDQLAGLDLGKVLRMCVVHDLGEAIHGDIP
AVEQAAHPDKGEQERADLLQLTRHLDTPLRDRLLALWDEYERGETAEALAVKALDKLETLLQHTQGDNPADFDYAFNLDY
GRRYTDRAPLFKTLRELLDARTRQRLAARRDA

Download         Length: 579 bp

Antitoxin


Download         Length: 185 a.a.        Molecular weight: 20470.63 Da        Isoelectric Point: 8.1590

>AT281035 WP_003132728.1 NZ_CP124666:3594669-3595223 [Pseudomonas aeruginosa]
MTEPLPSSSLGPALRRWRLLHRVKQTHAAELLGVAQSTISRWESGTQALLVEERARLERLLGARLESAADQALARLVEAN
PQPVHLICDLTHRLLACSPARAAQFGVPLGELLDRSLWPYCSEEILRQEATLEELGWRELLAPPALEFASGANASAIVPI
RRSRCRWTRMTLSDGRAVRLVETL

Download         Length: 555 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H2Z8V4

Antitoxin

Source ID Structure

References