Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 3579491..3580711 Replicon chromosome
Accession NZ_CP124665
Organism Pseudomonas aeruginosa strain 2021CK-01229

Toxin (Protein)


Gene name vapC Uniprot ID A0A0H2Z8V4
Locus tag QJ956_RS16570 Protein ID WP_003110488.1
Coordinates 3580133..3580711 (+) Length 193 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QJ956_RS16565 Protein ID WP_003132728.1
Coordinates 3579491..3580045 (+) Length 185 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJ956_RS16540 (QJ956_16540) 3575059..3575610 + 552 WP_031685890.1 XRE family transcriptional regulator -
QJ956_RS16545 (QJ956_16545) 3575607..3576005 - 399 WP_003088123.1 NADH-quinone oxidoreductase subunit A -
QJ956_RS16550 (QJ956_16550) 3576018..3576341 - 324 WP_003102734.1 multidrug efflux SMR transporter -
QJ956_RS16555 (QJ956_16555) 3576672..3577133 + 462 WP_003102736.1 (2Fe-2S)-binding protein -
QJ956_RS16560 (QJ956_16560) 3577138..3579333 + 2196 WP_033957494.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
QJ956_RS16565 (QJ956_16565) 3579491..3580045 + 555 WP_003132728.1 helix-turn-helix transcriptional regulator Antitoxin
QJ956_RS16570 (QJ956_16570) 3580133..3580711 + 579 WP_003110488.1 HD domain-containing protein Toxin
QJ956_RS16575 (QJ956_16575) 3580821..3582008 - 1188 WP_003110489.1 HlyD family efflux transporter periplasmic adaptor subunit -
QJ956_RS16580 (QJ956_16580) 3581998..3584169 - 2172 WP_033957491.1 type I secretion system permease/ATPase -
QJ956_RS16585 (QJ956_16585) 3584159..3585436 - 1278 WP_003088104.1 TolC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

5'-deoxynucleotidase YfbR/HDDC2

(7-188)

Antitoxin

Cro/C1-type helix-turn-helix domain

(14-62)


Sequences

Toxin        


Download         Length: 193 a.a.        Molecular weight: 21913.75 Da        Isoelectric Point: 5.3655

>T281029 WP_003110488.1 NZ_CP124665:3580133-3580711 [Pseudomonas aeruginosa]
MSLELLSNRLEFLREAERLKDVLRSAHTSSGRPESTAEHSWRLCLMALAFEDQLAGLDLGKVLRMCVVHDLGEAIHGDIP
AVEQAAHPDKGEQERADLLQLTRHLDTPLRDRLLALWDEYERGETAEALAVKALDKLETLLQHTQGDNPADFDYAFNLDY
GRRYTDRAPLFKTLRELLDARTRQRLAARRDA

Download         Length: 579 bp

Antitoxin


Download         Length: 185 a.a.        Molecular weight: 20470.63 Da        Isoelectric Point: 8.1590

>AT281029 WP_003132728.1 NZ_CP124665:3579491-3580045 [Pseudomonas aeruginosa]
MTEPLPSSSLGPALRRWRLLHRVKQTHAAELLGVAQSTISRWESGTQALLVEERARLERLLGARLESAADQALARLVEAN
PQPVHLICDLTHRLLACSPARAAQFGVPLGELLDRSLWPYCSEEILRQEATLEELGWRELLAPPALEFASGANASAIVPI
RRSRCRWTRMTLSDGRAVRLVETL

Download         Length: 555 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H2Z8V4

Antitoxin

Source ID Structure

References