Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 1246511..1247070 Replicon chromosome
Accession NZ_CP124613
Organism Vibrio sp. YMD68

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QF117_RS05485 Protein ID WP_282385220.1
Coordinates 1246511..1246789 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QF117_RS05490 Protein ID WP_248007030.1
Coordinates 1246786..1247070 (-) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QF117_RS05465 (QF117_05465) 1241895..1242218 - 324 WP_282386162.1 CZB domain-containing protein -
QF117_RS05470 (QF117_05470) 1242351..1242722 - 372 Protein_1085 methyl-accepting chemotaxis protein -
QF117_RS05475 (QF117_05475) 1243601..1244524 - 924 WP_282385217.1 LysR family transcriptional regulator -
QF117_RS05480 (QF117_05480) 1244646..1246202 + 1557 WP_282385219.1 carboxylesterase family protein -
QF117_RS05485 (QF117_05485) 1246511..1246789 - 279 WP_282385220.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QF117_RS05490 (QF117_05490) 1246786..1247070 - 285 WP_248007030.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
QF117_RS05495 (QF117_05495) 1247370..1248251 - 882 WP_282385223.1 LysR family transcriptional regulator -
QF117_RS05500 (QF117_05500) 1248443..1249648 + 1206 WP_282385224.1 MFS transporter -
QF117_RS05505 (QF117_05505) 1249723..1250415 + 693 WP_282385225.1 SDR family oxidoreductase -
QF117_RS05510 (QF117_05510) 1250764..1251957 - 1194 WP_282385226.1 acetate/propionate family kinase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(1-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-70)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10920.66 Da        Isoelectric Point: 4.4663

>T280875 WP_282385220.1 NZ_CP124613:c1246789-1246511 [Vibrio sp. YMD68]
MILWEEESLNDREKIFEFLYDFNPEAAEKTDELIETKVENLAIQPLMGVRRDGVRGRLLIIPEISMIVSYWVEGDIIRIM
RVLHQKQKFPTD

Download         Length: 279 bp

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10866.33 Da        Isoelectric Point: 9.1871

>AT280875 WP_248007030.1 NZ_CP124613:c1247070-1246786 [Vibrio sp. YMD68]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDVWLTEQVNLAFEKFDTGKAVFVDHASAKSL
MAERKAKIRNRGKL

Download         Length: 285 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References