Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 945912..946440 | Replicon | chromosome |
| Accession | NZ_CP124613 | ||
| Organism | Vibrio sp. YMD68 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | QF117_RS04265 | Protein ID | WP_282384863.1 |
| Coordinates | 945912..946202 (-) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR02 |
| Locus tag | QF117_RS04270 | Protein ID | WP_005377003.1 |
| Coordinates | 946192..946440 (-) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QF117_RS04245 (QF117_04245) | 941493..942443 | + | 951 | WP_102386837.1 | DUF559 domain-containing protein | - |
| QF117_RS04250 (QF117_04250) | 942464..942556 | + | 93 | WP_005445235.1 | DUF3265 domain-containing protein | - |
| QF117_RS04255 (QF117_04255) | 942590..942910 | + | 321 | WP_282384861.1 | hypothetical protein | - |
| QF117_RS04260 (QF117_04260) | 942900..943391 | + | 492 | WP_108162637.1 | hypothetical protein | - |
| QF117_RS04265 (QF117_04265) | 945912..946202 | - | 291 | WP_282384863.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| QF117_RS04270 (QF117_04270) | 946192..946440 | - | 249 | WP_005377003.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| QF117_RS04275 (QF117_04275) | 947254..947550 | - | 297 | WP_282384864.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| QF117_RS04280 (QF117_04280) | 947557..947799 | - | 243 | WP_045957228.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| QF117_RS04285 (QF117_04285) | 948081..948587 | + | 507 | WP_282384803.1 | hypothetical protein | - |
| QF117_RS04290 (QF117_04290) | 948610..948702 | + | 93 | WP_079764003.1 | DUF3265 domain-containing protein | - |
| QF117_RS04295 (QF117_04295) | 948714..950303 | + | 1590 | WP_282384871.1 | RNA-directed DNA polymerase | - |
| QF117_RS04300 (QF117_04300) | 950260..951372 | + | 1113 | WP_282384872.1 | DUF2971 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | - | 894306..961154 | 66848 | |
| - | inside | Genomic island | - | - | 928286..952694 | 24408 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|