Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 5519358..5519967 Replicon chromosome
Accession NZ_CP124543
Organism Halotia branconii CENA392

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QI031_RS24235 Protein ID WP_281482154.1
Coordinates 5519358..5519720 (-) Length 121 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QI031_RS24240 Protein ID WP_281482155.1
Coordinates 5519710..5519967 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QI031_RS24215 (QI031_24215) 5514470..5517262 - 2793 WP_281482150.1 preprotein translocase subunit SecA -
QI031_RS24220 (QI031_24220) 5517844..5518380 - 537 WP_281482151.1 cytochrome C -
QI031_RS24225 (QI031_24225) 5518675..5519028 - 354 WP_281482152.1 type II toxin-antitoxin system RelE/ParE family toxin -
QI031_RS24230 (QI031_24230) 5519018..5519275 - 258 WP_281482153.1 hypothetical protein -
QI031_RS24235 (QI031_24235) 5519358..5519720 - 363 WP_281482154.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QI031_RS24240 (QI031_24240) 5519710..5519967 - 258 WP_281482155.1 hypothetical protein Antitoxin
QI031_RS24245 (QI031_24245) 5520154..5520918 + 765 WP_281482156.1 glycosyltransferase family A protein -
QI031_RS24250 (QI031_24250) 5520939..5522597 + 1659 WP_281482157.1 hormogonium polysaccharide biosynthesis protein HpsL -
QI031_RS24255 (QI031_24255) 5522712..5523701 + 990 WP_281482158.1 hormogonium polysaccharide biosynthesis glycosyltransferase HpsN -
QI031_RS24260 (QI031_24260) 5523773..5524954 + 1182 WP_281486112.1 hormogonium polysaccharide biosynthesis glycosyltransferase HpsO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 121 a.a.        Molecular weight: 13978.77 Da        Isoelectric Point: 4.7783

>T280849 WP_281482154.1 NZ_CP124543:c5519720-5519358 [Halotia branconii CENA392]
MQSDEAVIIRFSDEFEEELYRLSKRFRNIRSDVQPIIEQLQQGNIIGDRIAGIGEEYIVYKVRVRNSNIQKGKSAGYCLI
YQVESPTTILLLTIYSKSDREDIGTNEIRDIVADFYHKQD

Download         Length: 363 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9481.83 Da        Isoelectric Point: 4.3766

>AT280849 WP_281482155.1 NZ_CP124543:c5519967-5519710 [Halotia branconii CENA392]
MKAIEVTGKIDAQGNLVLDEPILGTPYPHQVRVIVLVPEQVEVKEVDPDDTPLEEIKASLRRALQQAKAGQTRPISELWD
RIDAE

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References