280830

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YefM
Location 960263..960791 Replicon chromosome
Accession NZ_CP124526
Organism Psychrobacter sp. WB2

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QJS82_RS04050 Protein ID WP_281491304.1
Coordinates 960263..960550 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QJS82_RS04055 Protein ID WP_281491305.1
Coordinates 960540..960791 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJS82_RS04025 (QJS82_04025) 955342..956199 - 858 WP_281491301.1 Nif3-like dinuclear metal center hexameric protein -
QJS82_RS04030 (QJS82_04030) 956667..957995 + 1329 WP_201624331.1 trypsin-like peptidase domain-containing protein -
QJS82_RS04035 (QJS82_04035) 958196..958462 - 267 WP_183617826.1 class I ribonucleotide reductase maintenance protein YfaE -
QJS82_RS04040 (QJS82_04040) 958658..959791 - 1134 WP_281491302.1 class Ia ribonucleoside-diphosphate reductase subunit beta -
QJS82_RS04045 (QJS82_04045) 959869..960240 - 372 WP_281491303.1 hypothetical protein -
QJS82_RS04050 (QJS82_04050) 960263..960550 - 288 WP_281491304.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
QJS82_RS04055 (QJS82_04055) 960540..960791 - 252 WP_281491305.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
QJS82_RS04060 (QJS82_04060) 960917..961450 - 534 WP_281491306.1 hypothetical protein -
QJS82_RS04065 (QJS82_04065) 961574..963850 - 2277 WP_281491307.1 class 1a ribonucleoside-diphosphate reductase subunit alpha -
QJS82_RS04070 (QJS82_04070) 964403..964783 - 381 WP_281491308.1 DUF493 domain-containing protein -
QJS82_RS04075 (QJS82_04075) 964911..965609 - 699 WP_281491309.1 class I SAM-dependent methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-68)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11015.94 Da        Isoelectric Point: 10.6783

>T280830 WP_281491304.1 NZ_CP124526:c960550-960263 [Psychrobacter sp. WB2]
MTYNLEFHPLALKEWKKLAPSIQQQFKKKLQQRLASPRVPASKLSGHTDAYKIKLRTIGYRLVYTVKDDVVVVYVLAVGK
RENNKVYESLVSRQP

Download         Length: 288 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9159.47 Da        Isoelectric Point: 4.2493

>AT280830 WP_281491305.1 NZ_CP124526:c960791-960540 [Psychrobacter sp. WB2]
MQPIFATQTASISELKNNPSALIKQSDGESIAILNHNKPVAYLVSTDMYERMMEAMDDMALSQTVSARMNDGQIPIKVTL
DDL

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References