Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2257714..2257982 | Replicon | chromosome |
| Accession | NZ_CP124513 | ||
| Organism | Escherichia coli strain AVS0366 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2257842..2257944 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2257714..2257982 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJP86_RS10770 | 2254267..2254929 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QJP86_RS10775 | 2254953..2255609 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QJP86_RS10780 | 2255711..2255941 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QJP86_RS10785 | 2256080..2256454 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QJP86_RS10790 | 2256458..2257330 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QJP86_RS10795 | 2257343..2257684 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2257714..2257982 | - | 269 | - | - | Antitoxin |
| - | 2257842..2257944 | + | 103 | - | - | Toxin |
| QJP86_RS10800 | 2258079..2258735 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| QJP86_RS10805 | 2258736..2258927 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QJP86_RS10810 | 2259032..2259268 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QJP86_RS10815 | 2259385..2260824 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T280743 NZ_CP124513:2257842-2257944 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT280743 NZ_CP124513:c2257982-2257714 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
