Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2179932..2180200 | Replicon | chromosome |
| Accession | NZ_CP124508 | ||
| Organism | Escherichia coli strain AVS0068 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2180060..2180162 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2179932..2180200 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJB02_RS10380 | 2176485..2177147 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QJB02_RS10385 | 2177171..2177827 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QJB02_RS10390 | 2177929..2178159 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QJB02_RS10395 | 2178298..2178672 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QJB02_RS10400 | 2178676..2179548 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QJB02_RS10405 | 2179561..2179902 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2179932..2180200 | - | 269 | - | - | Antitoxin |
| - | 2180060..2180162 | + | 103 | - | - | Toxin |
| QJB02_RS10410 | 2180297..2180953 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| QJB02_RS10415 | 2180954..2181145 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QJB02_RS10420 | 2181250..2181486 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QJB02_RS10425 | 2181603..2183042 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T280699 NZ_CP124508:2180060-2180162 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT280699 NZ_CP124508:c2180200-2179932 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
