Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2217983..2218251 | Replicon | chromosome |
| Accession | NZ_CP124487 | ||
| Organism | Escherichia coli strain AVS0542 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2218111..2218213 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2217983..2218251 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJP68_RS10625 | 2214536..2215198 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QJP68_RS10630 | 2215222..2215878 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QJP68_RS10635 | 2215980..2216210 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QJP68_RS10640 | 2216349..2216723 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QJP68_RS10645 | 2216727..2217599 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QJP68_RS10650 | 2217612..2217953 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2217983..2218251 | - | 269 | - | - | Antitoxin |
| - | 2218111..2218213 | + | 103 | - | - | Toxin |
| QJP68_RS10655 | 2218348..2219004 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| QJP68_RS10660 | 2219005..2219196 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QJP68_RS10665 | 2219301..2219537 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QJP68_RS10670 | 2219654..2221093 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T280518 NZ_CP124487:2218111-2218213 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT280518 NZ_CP124487:c2218251-2217983 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
