Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2179470..2179738 | Replicon | chromosome |
| Accession | NZ_CP124483 | ||
| Organism | Escherichia coli strain AVS0575 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2179598..2179700 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2179470..2179738 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJP96_RS10380 | 2176023..2176685 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QJP96_RS10385 | 2176709..2177365 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QJP96_RS10390 | 2177467..2177697 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QJP96_RS10395 | 2177836..2178210 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QJP96_RS10400 | 2178214..2179086 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QJP96_RS10405 | 2179099..2179440 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2179470..2179738 | - | 269 | - | - | Antitoxin |
| - | 2179598..2179700 | + | 103 | - | - | Toxin |
| QJP96_RS10410 | 2179835..2180491 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| QJP96_RS10415 | 2180492..2180683 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QJP96_RS10420 | 2180788..2181024 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QJP96_RS10425 | 2181141..2182580 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T280497 NZ_CP124483:2179598-2179700 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT280497 NZ_CP124483:c2179738-2179470 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
