Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2303587..2303855 | Replicon | chromosome |
| Accession | NZ_CP124475 | ||
| Organism | Escherichia coli strain AVS0969 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2303715..2303817 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2303587..2303855 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJP78_RS11430 | 2300140..2300802 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QJP78_RS11435 | 2300826..2301482 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QJP78_RS11440 | 2301584..2301814 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QJP78_RS11445 | 2301953..2302327 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QJP78_RS11450 | 2302331..2303203 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QJP78_RS11455 | 2303216..2303557 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2303587..2303855 | - | 269 | - | - | Antitoxin |
| - | 2303715..2303817 | + | 103 | - | - | Toxin |
| QJP78_RS11460 | 2303952..2304608 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| QJP78_RS11465 | 2304609..2304800 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QJP78_RS11470 | 2304905..2305141 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QJP78_RS11475 | 2305258..2306697 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2225061..2306703 | 81642 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T280433 NZ_CP124475:2303715-2303817 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT280433 NZ_CP124475:c2303855-2303587 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
