Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 559956..560187 | Replicon | chromosome |
| Accession | NZ_CP124442 | ||
| Organism | Escherichia coli strain AVS0196 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 559957..560059 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 559956..560187 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJP94_RS02900 | 557154..557963 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| QJP94_RS02905 | 558020..558214 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| QJP94_RS02910 | 558207..558395 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 558213..558391 | - | 179 | NuclAT_0 | - | - |
| - | 558213..558391 | - | 179 | NuclAT_0 | - | - |
| - | 558213..558391 | - | 179 | NuclAT_0 | - | - |
| - | 558213..558391 | - | 179 | NuclAT_0 | - | - |
| QJP94_RS02915 | 558502..558783 | + | 282 | WP_001311878.1 | excisionase | - |
| QJP94_RS02920 | 558749..559825 | + | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 559956..560187 | + | 232 | - | - | Antitoxin |
| - | 559957..560059 | - | 103 | - | - | Toxin |
| QJP94_RS02925 | 560217..560558 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QJP94_RS02930 | 560571..561443 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QJP94_RS02935 | 561447..561821 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QJP94_RS02940 | 561960..562190 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QJP94_RS02945 | 562292..562948 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QJP94_RS02950 | 562972..563634 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 514559..565691 | 51132 | |
| - | inside | Prophage | - | - | 509178..567242 | 58064 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T280282 NZ_CP124442:c560059-559957 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 232 bp
>AT280282 NZ_CP124442:559956-560187 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTT
