Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3853671..3853839 | Replicon | chromosome |
| Accession | NC_018106 | ||
| Organism | Klebsiella oxytoca E718 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3853678..3853781 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3853671..3853839 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A225_RS17905 | 3848945..3849463 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| A225_RS17910 | 3849482..3850246 | + | 765 | WP_014229834.1 | molecular chaperone | - |
| A225_RS17915 | 3850249..3852579 | + | 2331 | WP_014838820.1 | fimbrial biogenesis outer membrane usher protein | - |
| A225_RS17920 | 3852594..3853553 | + | 960 | WP_014229836.1 | spore coat U domain-containing protein | - |
| - | 3853671..3853839 | + | 169 | - | - | Antitoxin |
| - | 3853678..3853781 | - | 104 | - | - | Toxin |
| A225_RS17925 | 3853938..3854276 | - | 339 | WP_004103344.1 | YebY family protein | - |
| A225_RS17930 | 3854293..3855162 | - | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| A225_RS17935 | 3855167..3855541 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| A225_RS17940 | 3855677..3855907 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| A225_RS17945 | 3855986..3856645 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| A225_RS17950 | 3856652..3858712 | - | 2061 | WP_014229840.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T28026 NC_018106:c3853781-3853678 [Klebsiella michiganensis E718]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT28026 NC_018106:3853671-3853839 [Klebsiella michiganensis E718]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
