Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2575572..2575840 | Replicon | chromosome |
| Accession | NZ_CP124429 | ||
| Organism | Escherichia coli strain AVS0051 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2575610..2575712 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2575572..2575840 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJP74_RS12720 | 2572730..2574169 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QJP74_RS12725 | 2574286..2574522 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QJP74_RS12730 | 2574627..2574818 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QJP74_RS12735 | 2574819..2575475 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 2575572..2575840 | + | 269 | - | - | Antitoxin |
| - | 2575610..2575712 | - | 103 | - | - | Toxin |
| QJP74_RS12740 | 2575870..2576211 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QJP74_RS12745 | 2576224..2577096 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QJP74_RS12750 | 2577100..2577474 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QJP74_RS12755 | 2577613..2577843 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QJP74_RS12760 | 2577945..2578601 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QJP74_RS12765 | 2578625..2579287 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T280225 NZ_CP124429:c2575712-2575610 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT280225 NZ_CP124429:2575572-2575840 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
