Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 4055574..4056192 Replicon chromosome
Accession NZ_CP124424
Organism Escherichia coli strain AVS0247

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag QJB03_RS19565 Protein ID WP_001291435.1
Coordinates 4055574..4055792 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag QJB03_RS19570 Protein ID WP_000344800.1
Coordinates 4055818..4056192 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJB03_RS19530 (4050861) 4050861..4051433 + 573 WP_000779831.1 YbaY family lipoprotein -
QJB03_RS19535 (4051464) 4051464..4051775 - 312 WP_000409908.1 MGMT family protein -
QJB03_RS19545 (4052154) 4052154..4052507 + 354 WP_000878135.1 DUF1428 family protein -
QJB03_RS19550 (4052549) 4052549..4054099 - 1551 WP_001385227.1 cyclic-guanylate-specific phosphodiesterase PdeB -
QJB03_RS19555 (4054263) 4054263..4054733 - 471 WP_000136192.1 YlaC family protein -
QJB03_RS19560 (4054849) 4054849..4055400 - 552 WP_000102539.1 maltose O-acetyltransferase -
QJB03_RS19565 (4055574) 4055574..4055792 - 219 WP_001291435.1 HHA domain-containing protein Toxin
QJB03_RS19570 (4055818) 4055818..4056192 - 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
QJB03_RS19575 (4056738) 4056738..4059887 - 3150 WP_001132478.1 efflux RND transporter permease AcrB -
QJB03_RS19580 (4059910) 4059910..4061103 - 1194 WP_001295833.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T280197 WP_001291435.1 NZ_CP124424:c4055792-4055574 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT280197 WP_000344800.1 NZ_CP124424:c4056192-4055818 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References