Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpSB/PRK09812-ChpS
Location 3284711..3285306 Replicon chromosome
Accession NZ_CP124424
Organism Escherichia coli strain AVS0247

Toxin (Protein)


Gene name chpB Uniprot ID U9Y4M4
Locus tag QJB03_RS15780 Protein ID WP_000239579.1
Coordinates 3284956..3285306 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID U9Y2K1
Locus tag QJB03_RS15775 Protein ID WP_001223208.1
Coordinates 3284711..3284962 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJB03_RS15765 (3280376) 3280376..3284155 + 3780 WP_000060945.1 autotransporter assembly complex protein TamB -
QJB03_RS15770 (3284158) 3284158..3284499 + 342 WP_001219160.1 gamma-glutamylcyclotransferase -
QJB03_RS15775 (3284711) 3284711..3284962 + 252 WP_001223208.1 type II toxin-antitoxin system antitoxin ChpS Antitoxin
QJB03_RS15780 (3284956) 3284956..3285306 + 351 WP_000239579.1 endoribonuclease toxin ChpB Toxin
QJB03_RS15785 (3285386) 3285386..3285916 - 531 WP_000055075.1 inorganic diphosphatase -
QJB03_RS15790 (3286226) 3286226..3287182 + 957 WP_000265933.1 galactofuranose ABC transporter substrate-binding protein YtfQ -
QJB03_RS15795 (3287322) 3287322..3288824 + 1503 WP_000205813.1 sugar ABC transporter ATP-binding protein -
QJB03_RS15800 (3288838) 3288838..3289860 + 1023 WP_001296689.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(8-114)

Antitoxin

SpoVT-AbrB domain

(6-49)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12511.45 Da        Isoelectric Point: 5.6219

>T280192 WP_000239579.1 NZ_CP124424:3284956-3285306 [Escherichia coli]
MVKKSEFERGDIVLVGFDPASGHEQQGAGRPALVLSVQAFNQLGMTLVAPITQGGNFARYAGFSVPLHCEEGDVHGVVLV
NQVRMMDLRARLAKRIGLAADEVVEEALLRLQAVVE

Download         Length: 351 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9271.58 Da        Isoelectric Point: 4.4201

>AT280192 WP_001223208.1 NZ_CP124424:3284711-3284962 [Escherichia coli]
MRITIKRWGNSAGMVIPNIVMKELNLQPGQSVEAQVSNNQLILTPISRRYSLDELLAQCDMNAAELSEQDVWGKSTPAGD
EIW

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y8A8

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LQ26

References