Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 516266..516534 | Replicon | chromosome |
| Accession | NZ_CP124424 | ||
| Organism | Escherichia coli strain AVS0247 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 516304..516406 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 516266..516534 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJB03_RS02570 | 513424..514863 | + | 1440 | WP_251296889.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QJB03_RS02575 | 514980..515216 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QJB03_RS02580 | 515321..515512 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QJB03_RS02585 | 515513..516169 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 516266..516534 | + | 269 | - | - | Antitoxin |
| - | 516304..516406 | - | 103 | - | - | Toxin |
| QJB03_RS02590 | 516564..516905 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QJB03_RS02595 | 516918..517790 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QJB03_RS02600 | 517794..518168 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QJB03_RS02605 | 518307..518537 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QJB03_RS02610 | 518639..519295 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QJB03_RS02615 | 519319..519981 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T280179 NZ_CP124424:c516406-516304 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT280179 NZ_CP124424:516266-516534 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
