Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2978807..2978950 | Replicon | chromosome |
| Accession | NC_018079 | ||
| Organism | Enterobacter cloacae subsp. dissolvens SDM | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2978812..2978915 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2978807..2978950 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3UG_RS14005 | 2974298..2974537 | + | 240 | WP_014832383.1 | YebV family protein | - |
| A3UG_RS14010 | 2974571..2975215 | - | 645 | WP_014832384.1 | protein-serine/threonine phosphatase | - |
| A3UG_RS14015 | 2975383..2976324 | + | 942 | WP_014832385.1 | VirK/YbjX family protein | - |
| A3UG_RS14020 | 2976816..2977913 | + | 1098 | WP_014832386.1 | glycosyl transferase | - |
| - | 2978807..2978950 | + | 144 | - | - | Antitoxin |
| - | 2978812..2978915 | - | 104 | - | - | Toxin |
| A3UG_RS14025 | 2979055..2979393 | - | 339 | WP_014832387.1 | YebY family protein | - |
| A3UG_RS14030 | 2979410..2980279 | - | 870 | WP_014832388.1 | copper homeostasis membrane protein CopD | - |
| A3UG_RS14035 | 2980281..2980652 | - | 372 | WP_014832389.1 | CopC domain-containing protein YobA | - |
| A3UG_RS14040 | 2980790..2981020 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| A3UG_RS14045 | 2981130..2981780 | + | 651 | WP_014832390.1 | carbon-nitrogen hydrolase family protein | - |
| A3UG_RS14050 | 2981804..2982466 | + | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T28000 NC_018079:c2978915-2978812 [Enterobacter cloacae subsp. dissolvens SDM]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT28000 NC_018079:2978807-2978950 [Enterobacter cloacae subsp. dissolvens SDM]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
