Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 4548865..4549362 Replicon chromosome
Accession NZ_CP124359
Organism Escherichia coli strain AVS0093

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag QJP83_RS22215 Protein ID WP_001173343.1
Coordinates 4548865..4549038 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID S1NQ59
Locus tag QJP83_RS22220 Protein ID WP_001312331.1
Coordinates 4549066..4549362 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJP83_RS22205 (4545535) 4545535..4546992 + 1458 WP_000856826.1 dipeptide/tripeptide permease DtpC -
QJP83_RS22210 (4547229) 4547229..4548746 + 1518 WP_000003806.1 lysine--tRNA ligase -
QJP83_RS22215 (4548865) 4548865..4549038 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
QJP83_RS22220 (4549066) 4549066..4549362 - 297 WP_001312331.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
QJP83_RS22225 (4549590) 4549590..4549862 - 273 WP_000405643.1 GNAT family N-acetyltransferase -
QJP83_RS22230 (4550076) 4550076..4554005 - 3930 WP_001080127.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4524122..4565045 40923


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T279848 WP_001173343.1 NZ_CP124359:c4549038-4548865 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11440.95 Da        Isoelectric Point: 4.1705

>AT279848 WP_001312331.1 NZ_CP124359:c4549362-4549066 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLSIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
AlphaFold DB S1NQ59

References