Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2259989..2260257 | Replicon | chromosome |
| Accession | NZ_CP124357 | ||
| Organism | Escherichia coli strain AVS0467 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2260117..2260219 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2259989..2260257 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJP58_RS10780 | 2256542..2257204 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QJP58_RS10785 | 2257228..2257884 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QJP58_RS10790 | 2257986..2258216 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QJP58_RS10795 | 2258355..2258729 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QJP58_RS10800 | 2258733..2259605 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QJP58_RS10805 | 2259618..2259959 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2259989..2260257 | - | 269 | - | - | Antitoxin |
| - | 2260117..2260219 | + | 103 | - | - | Toxin |
| QJP58_RS10810 | 2260354..2261010 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| QJP58_RS10815 | 2261011..2261202 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QJP58_RS10820 | 2261307..2261543 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QJP58_RS10825 | 2261660..2263099 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T279813 NZ_CP124357:2260117-2260219 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT279813 NZ_CP124357:c2260257-2259989 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
