Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 3370395..3370892 Replicon chromosome
Accession NZ_CP124355
Organism Escherichia coli strain AVS0171

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag QJB00_RS16535 Protein ID WP_001173343.1
Coordinates 3370719..3370892 (+) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID S1NQ59
Locus tag QJB00_RS16530 Protein ID WP_001312331.1
Coordinates 3370395..3370691 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJB00_RS16520 (3365752) 3365752..3369681 + 3930 WP_001080129.1 autotransporter outer membrane beta-barrel domain-containing protein -
QJB00_RS16525 (3369895) 3369895..3370167 + 273 WP_000405647.1 GNAT family N-acetyltransferase -
QJB00_RS16530 (3370395) 3370395..3370691 + 297 WP_001312331.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
QJB00_RS16535 (3370719) 3370719..3370892 + 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
QJB00_RS16540 (3371011) 3371011..3372528 - 1518 WP_000003806.1 lysine--tRNA ligase -
QJB00_RS16545 (3372765) 3372765..3374222 - 1458 WP_000856826.1 dipeptide/tripeptide permease DtpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 3354804..3379746 24942


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T279783 WP_001173343.1 NZ_CP124355:3370719-3370892 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11440.95 Da        Isoelectric Point: 4.1705

>AT279783 WP_001312331.1 NZ_CP124355:3370395-3370691 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLSIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
AlphaFold DB S1NQ59

References