Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 514904..515172 | Replicon | chromosome |
Accession | NZ_CP124351 | ||
Organism | Escherichia coli strain AVS0362 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 514942..515044 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 514904..515172 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QJP84_RS02565 | 512062..513501 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
QJP84_RS02570 | 513618..513854 | + | 237 | WP_001295499.1 | YebV family protein | - |
QJP84_RS02575 | 513959..514150 | + | 192 | WP_001296140.1 | YebW family protein | - |
QJP84_RS02580 | 514151..514807 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
- | 514904..515172 | + | 269 | - | - | Antitoxin |
- | 514942..515044 | - | 103 | - | - | Toxin |
QJP84_RS02585 | 515202..515543 | - | 342 | WP_000976472.1 | YebY family protein | - |
QJP84_RS02590 | 515556..516428 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
QJP84_RS02595 | 516432..516806 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
QJP84_RS02600 | 516945..517175 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
QJP84_RS02605 | 517277..517933 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
QJP84_RS02610 | 517957..518619 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T279701 NZ_CP124351:c515044-514942 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT279701 NZ_CP124351:514904-515172 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT