Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 514904..515172 Replicon chromosome
Accession NZ_CP124351
Organism Escherichia coli strain AVS0362

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 514942..515044 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 514904..515172 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QJP84_RS02565 512062..513501 + 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
QJP84_RS02570 513618..513854 + 237 WP_001295499.1 YebV family protein -
QJP84_RS02575 513959..514150 + 192 WP_001296140.1 YebW family protein -
QJP84_RS02580 514151..514807 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 514904..515172 + 269 - - Antitoxin
- 514942..515044 - 103 - - Toxin
QJP84_RS02585 515202..515543 - 342 WP_000976472.1 YebY family protein -
QJP84_RS02590 515556..516428 - 873 WP_000879317.1 copper homeostasis membrane protein CopD -
QJP84_RS02595 516432..516806 - 375 WP_000168747.1 CopC domain-containing protein YobA -
QJP84_RS02600 516945..517175 + 231 WP_000916763.1 DNA polymerase III subunit theta -
QJP84_RS02605 517277..517933 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein YobB -
QJP84_RS02610 517957..518619 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T279701 NZ_CP124351:c515044-514942 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT279701 NZ_CP124351:514904-515172 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References