Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3359827..3359972 | Replicon | chromosome |
| Accession | NZ_CP124220 | ||
| Organism | Klebsiella pneumoniae strain Z | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3359834..3359936 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3359827..3359972 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QG930_RS16230 (QG930_16230) | 3355359..3356792 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QG930_RS16235 (QG930_16235) | 3356908..3357147 | + | 240 | WP_002911393.1 | YebV family protein | - |
| QG930_RS16240 (QG930_16240) | 3357245..3357436 | + | 192 | WP_002911395.1 | YebW family protein | - |
| QG930_RS16245 (QG930_16245) | 3357433..3358086 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| QG930_RS16250 (QG930_16250) | 3358243..3359211 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| QG930_RS16255 (QG930_16255) | 3359316..3359459 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3359827..3359972 | + | 146 | - | - | Antitoxin |
| - | 3359834..3359936 | - | 103 | - | - | Toxin |
| QG930_RS16260 (QG930_16260) | 3360095..3360433 | - | 339 | WP_002911404.1 | YebY family protein | - |
| QG930_RS16265 (QG930_16265) | 3360450..3361319 | - | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| QG930_RS16270 (QG930_16270) | 3361323..3361697 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QG930_RS16275 (QG930_16275) | 3361810..3362040 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QG930_RS16280 (QG930_16280) | 3362119..3362778 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QG930_RS16285 (QG930_16285) | 3362782..3364842 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T279337 NZ_CP124220:c3359936-3359834 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT279337 NZ_CP124220:3359827-3359972 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
