Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2721505..2721706 | Replicon | chromosome |
| Accession | NZ_CP124121 | ||
| Organism | Enterobacter hormaechei strain 2020CK-00198 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2721510..2721613 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2721505..2721706 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QIW35_RS12925 (QIW35_12925) | 2716721..2716981 | - | 261 | WP_039270557.1 | hypothetical protein | - |
| QIW35_RS12930 (QIW35_12930) | 2716965..2717249 | - | 285 | WP_039270555.1 | phage holin family protein | - |
| QIW35_RS12935 (QIW35_12935) | 2717389..2717586 | - | 198 | WP_127850788.1 | hypothetical protein | - |
| QIW35_RS12940 (QIW35_12940) | 2717616..2718050 | - | 435 | WP_039270553.1 | hypothetical protein | - |
| QIW35_RS12950 (QIW35_12950) | 2719496..2720011 | - | 516 | WP_039270551.1 | hypothetical protein | - |
| QIW35_RS12955 (QIW35_12955) | 2720244..2720657 | - | 414 | WP_052685510.1 | bacteriophage antitermination protein Q | - |
| QIW35_RS12960 (QIW35_12960) | 2721047..2721421 | + | 375 | Protein_2531 | tyrosine-type recombinase/integrase | - |
| - | 2721505..2721706 | + | 202 | - | - | Antitoxin |
| - | 2721510..2721613 | - | 104 | - | - | Toxin |
| QIW35_RS12965 (QIW35_12965) | 2721755..2722093 | - | 339 | WP_003859787.1 | YebY family protein | - |
| QIW35_RS12970 (QIW35_12970) | 2722110..2722979 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| QIW35_RS12975 (QIW35_12975) | 2722981..2723352 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| QIW35_RS12980 (QIW35_12980) | 2723490..2723720 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| QIW35_RS12985 (QIW35_12985) | 2723832..2724482 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| QIW35_RS12990 (QIW35_12990) | 2724507..2725169 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2705289..2727226 | 21937 | |
| - | inside | Prophage | - | - | 2697740..2742451 | 44711 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T279318 NZ_CP124121:c2721613-2721510 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT279318 NZ_CP124121:2721505-2721706 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
