279264

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-YefM
Location 940086..940801 Replicon chromosome
Accession NZ_CP123958
Organism Mannheimia haemolytica strain 190176

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QH638_RS04850 Protein ID WP_006250491.1
Coordinates 940373..940801 (+) Length 143 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A248ZW87
Locus tag QH638_RS04845 Protein ID WP_006248272.1
Coordinates 940086..940373 (+) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QH638_RS04830 935946..937661 - 1716 WP_006248268.1 proline--tRNA ligase -
QH638_RS04835 937825..937986 - 162 WP_015483997.1 hypothetical protein -
QH638_RS04840 938039..939922 - 1884 WP_006248270.1 molecular chaperone HtpG -
QH638_RS04845 940086..940373 + 288 WP_006248272.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
QH638_RS04850 940373..940801 + 429 WP_006250491.1 type II toxin-antitoxin system VapC family toxin Toxin
QH638_RS04855 940805..942886 + 2082 WP_006248274.1 ATP-dependent DNA helicase RecG -
QH638_RS04860 942908..943842 - 935 Protein_923 nucleoside hydrolase -
QH638_RS04865 943895..945547 - 1653 WP_006248275.1 phospho-sugar mutase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-129)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 143 a.a.        Molecular weight: 16640.06 Da        Isoelectric Point: 8.9269

>T279264 WP_006250491.1 NZ_CP123958:940373-940801 [Mannheimia haemolytica]
MYRYLFDTNIVSELYKLRNDKMDVNVRQWLRGVNPSQTNISCITLSEIKTGILLKARKDKEQSDRLNDWFENNVLKAYQT
KAFVVNNDIALLASEYHIPNKMDLNDAYIAATAKYHNLILVTRNTKDFIRCDVRLFNPFETA

Download         Length: 429 bp

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 11085.39 Da        Isoelectric Point: 4.3648

>AT279264 WP_006248272.1 NZ_CP123958:940086-940373 [Mannheimia haemolytica]
MAITITSREFNQNASKVLKMAEKEPVFITKWGKIVNVVSSYMDYQQKKPSEPSFEELFASSENEDVSDEFWQEFEQTLVE
IRKSNKPRPVDFGDE

Download         Length: 288 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A248ZW87

References