Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3160407..3160678 | Replicon | chromosome |
| Accession | NZ_CP123951 | ||
| Organism | Escherichia coli strain TL012 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3160537..3160640 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3160407..3160678 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QGM68_RS15075 | 3156962..3157624 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QGM68_RS15080 | 3157648..3158304 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QGM68_RS15085 | 3158406..3158636 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QGM68_RS15090 | 3158775..3159149 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QGM68_RS15095 | 3159153..3160025 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| QGM68_RS15100 | 3160038..3160379 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3160407..3160678 | - | 272 | - | - | Antitoxin |
| - | 3160537..3160640 | + | 104 | - | - | Toxin |
| QGM68_RS15105 | 3160775..3161431 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| QGM68_RS15110 | 3161432..3161623 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QGM68_RS15115 | 3161728..3161964 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QGM68_RS15120 | 3162082..3163521 | - | 1440 | WP_024174420.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T279237 NZ_CP123951:3160537-3160640 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT279237 NZ_CP123951:c3160678-3160407 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
