Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | sanaTA/AbiEii-DUF6088 |
Location | 14989..16324 | Replicon | plasmid unnamed2 |
Accession | NZ_CP123914 | ||
Organism | Acinetobacter bereziniae strain UCO-553 |
Toxin (Protein)
Gene name | sanaT | Uniprot ID | - |
Locus tag | QHG52_RS21445 | Protein ID | WP_120376155.1 |
Coordinates | 15377..16324 (+) | Length | 316 a.a. |
Antitoxin (Protein)
Gene name | sanaA | Uniprot ID | - |
Locus tag | QHG52_RS21440 | Protein ID | WP_120376154.1 |
Coordinates | 14989..15384 (+) | Length | 132 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QHG52_RS21435 | 12804..13325 | + | 522 | Protein_13 | IS3 family transposase | - |
QHG52_RS21440 | 14989..15384 | + | 396 | WP_120376154.1 | DUF6088 family protein | Antitoxin |
QHG52_RS21445 | 15377..16324 | + | 948 | WP_120376155.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin |
QHG52_RS21450 | 16560..18392 | - | 1833 | WP_281104415.1 | relaxase/mobilization nuclease domain-containing protein | - |
QHG52_RS21455 | 18389..18712 | - | 324 | WP_120376123.1 | hypothetical protein | - |
QHG52_RS21460 | 18988..19362 | + | 375 | WP_120376124.1 | hypothetical protein | - |
QHG52_RS21465 | 19390..20685 | - | 1296 | WP_120376125.1 | Y-family DNA polymerase | - |
QHG52_RS21470 | 20709..21287 | - | 579 | WP_120376126.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | sul2 / tet(Y) / aph(6)-Id / aph(3'')-Ib | - | 1..35184 | 35184 | |
- | flank | IS/Tn | - | - | 13059..13343 | 284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 316 a.a. Molecular weight: 36241.70 Da Isoelectric Point: 6.3975
>T279222 WP_120376155.1 NZ_CP123914:15377-16324 [Acinetobacter bereziniae]
MPDIKNVFADVADALGIGATSIVEKDYYVVELLRLLQSLEFETHDLVFAGGTSLAKANIQLNRMSEDVDIKIVPKPNIAL
SRSKAKVVRKQLLHQVQDKISQSDFFTIEEEPVVWDEYRYMELLIRYPQHFNQAPCLRPFIKLELVETDLLEPFESRSIT
SFVYDLAKKGKPVDAFPSVTIVSTSIEKLIAILRRTAAFARNAERADDESLVRHVYDYFKITYGKPQDFVYLGHLATKVI
KTDIERYGRQHTLMVEDPIAELLFGLNELSRNPLYKARFNNFVVPMVFGDKQISWQQAYSHFQDSVQQIFANLKL
MPDIKNVFADVADALGIGATSIVEKDYYVVELLRLLQSLEFETHDLVFAGGTSLAKANIQLNRMSEDVDIKIVPKPNIAL
SRSKAKVVRKQLLHQVQDKISQSDFFTIEEEPVVWDEYRYMELLIRYPQHFNQAPCLRPFIKLELVETDLLEPFESRSIT
SFVYDLAKKGKPVDAFPSVTIVSTSIEKLIAILRRTAAFARNAERADDESLVRHVYDYFKITYGKPQDFVYLGHLATKVI
KTDIERYGRQHTLMVEDPIAELLFGLNELSRNPLYKARFNNFVVPMVFGDKQISWQQAYSHFQDSVQQIFANLKL
Download Length: 948 bp
Antitoxin
Download Length: 132 a.a. Molecular weight: 14884.31 Da Isoelectric Point: 10.6946
>AT279222 WP_120376154.1 NZ_CP123914:14989-15384 [Acinetobacter bereziniae]
MTTKAKMQMRIKRSKRYVFMRDDFNDIANYDQIGRVLRNLVQEGELIKVGYGIYTKARKNQITGKVMPACPEGADAVILE
ALKRLDVQVTLGEATEKYLSGQSTQIPAFTQIKTPRRFTRQLSVGRSQINA
MTTKAKMQMRIKRSKRYVFMRDDFNDIANYDQIGRVLRNLVQEGELIKVGYGIYTKARKNQITGKVMPACPEGADAVILE
ALKRLDVQVTLGEATEKYLSGQSTQIPAFTQIKTPRRFTRQLSVGRSQINA
Download Length: 396 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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