Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 5963333..5963849 Replicon chromosome
Accession NZ_CP123909
Organism Pseudomonas atacamensis strain MGMM4

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QG303_RS26925 Protein ID WP_122751862.1
Coordinates 5963333..5963614 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A2U1R4X8
Locus tag QG303_RS26930 Protein ID WP_041477418.1
Coordinates 5963604..5963849 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QG303_RS26905 (QG303_26905) 5959392..5960279 - 888 WP_016772263.1 HlyD family secretion protein -
QG303_RS26910 (QG303_26910) 5960276..5960485 - 210 WP_016772264.1 DUF1656 domain-containing protein -
QG303_RS26915 (QG303_26915) 5960482..5962545 - 2064 WP_133337580.1 FUSC family protein -
QG303_RS26920 (QG303_26920) 5962542..5962970 - 429 WP_016772266.1 winged helix DNA-binding protein -
QG303_RS26925 (QG303_26925) 5963333..5963614 - 282 WP_122751862.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QG303_RS26930 (QG303_26930) 5963604..5963849 - 246 WP_041477418.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
QG303_RS26935 (QG303_26935) 5963939..5964184 - 246 WP_122705336.1 DUF2789 domain-containing protein -
QG303_RS26940 (QG303_26940) 5964263..5965828 - 1566 WP_281120578.1 efflux transporter outer membrane subunit -
QG303_RS26945 (QG303_26945) 5965825..5966892 - 1068 WP_281120579.1 HlyD family secretion protein -
QG303_RS26950 (QG303_26950) 5966920..5968458 - 1539 WP_281120580.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(9-70)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10872.75 Da        Isoelectric Point: 10.5812

>T279220 WP_122751862.1 NZ_CP123909:c5963614-5963333 [Pseudomonas atacamensis]
MTYKLEFLPSAHKEWNKLGHTLREQFKKKLGERLKLPRIPADALHSMPDCYKIKLKASGYRLVYQVIDERVVVSVLAVGK
RERSSVYDTARNR

Download         Length: 282 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8806.13 Da        Isoelectric Point: 4.4988

>AT279220 WP_041477418.1 NZ_CP123909:c5963849-5963604 [Pseudomonas atacamensis]
MQSVLADMAVSVSELKKNPTAVLNGAHGGAVAVLNHNRVMGYMVPAEVYEAMMERLDDLELADIVRSRLHETPISVSLDD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A2U1R4X8

References