Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/- |
| Location | 5264762..5265351 | Replicon | chromosome |
| Accession | NZ_CP123909 | ||
| Organism | Pseudomonas atacamensis strain MGMM4 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | - |
| Locus tag | QG303_RS23980 | Protein ID | WP_281120398.1 |
| Coordinates | 5264762..5265013 (+) | Length | 84 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | V8R847 |
| Locus tag | QG303_RS23985 | Protein ID | WP_016771749.1 |
| Coordinates | 5265010..5265351 (+) | Length | 114 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QG303_RS23960 (QG303_23960) | 5260080..5260640 | - | 561 | WP_122880542.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| QG303_RS23965 (QG303_23965) | 5260705..5262882 | - | 2178 | WP_281120395.1 | DUF1631 domain-containing protein | - |
| QG303_RS23970 (QG303_23970) | 5263150..5263998 | + | 849 | WP_281120396.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QG303_RS23975 (QG303_23975) | 5264107..5264406 | - | 300 | WP_281120397.1 | DUF6388 family protein | - |
| QG303_RS23980 (QG303_23980) | 5264762..5265013 | + | 252 | WP_281120398.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| QG303_RS23985 (QG303_23985) | 5265010..5265351 | + | 342 | WP_016771749.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| QG303_RS23995 (QG303_23995) | 5265601..5267706 | - | 2106 | WP_024011572.1 | polyribonucleotide nucleotidyltransferase | - |
| QG303_RS24000 (QG303_24000) | 5267911..5268180 | - | 270 | WP_016771751.1 | 30S ribosomal protein S15 | - |
| QG303_RS24005 (QG303_24005) | 5268324..5269241 | - | 918 | WP_160767822.1 | tRNA pseudouridine(55) synthase TruB | - |
| QG303_RS24010 (QG303_24010) | 5269246..5269647 | - | 402 | WP_016771753.1 | 30S ribosome-binding factor RbfA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 5256043..5265351 | 9308 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|