279216

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PP_4151-4152/excise(antitoxin)
Location 4416466..4417505 Replicon chromosome
Accession NZ_CP123909
Organism Pseudomonas atacamensis strain MGMM4

Toxin (Protein)


Gene name PP_4152 Uniprot ID -
Locus tag QG303_RS20070 Protein ID WP_076566634.1
Coordinates 4416930..4417505 (+) Length 192 a.a.

Antitoxin (Protein)


Gene name PP_4151 Uniprot ID -
Locus tag QG303_RS20065 Protein ID WP_160768170.1
Coordinates 4416466..4416933 (+) Length 156 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(9-115)

Antitoxin

Helix-turn-helix domain, group 17

(84-132)


Sequences

Toxin        


Download         Length: 192 a.a.        Molecular weight: 21688.71 Da        Isoelectric Point: 6.1390

>T279216 WP_076566634.1 NZ_CP123909:4416930-4417505 [Pseudomonas atacamensis]
VRHSSFTAVYDACVLYPAPLRDFLMWLALSGLYRARWTQEIHHEWKRNLLKNRSDLTLEQLDRTSQLMDLAIPDACIDGY
EDLVSGLTLPDENDRHVLAAAIRCGADVIVTFNLKDFPTRHLAPYGIEAQHPDEFVENLFHLDSAAVVAAAQSQRRQLKT
PNVEVDKYLGFLQRQGLVESVKALGNYRAIL

Download         Length: 576 bp

Antitoxin


Download         Length: 156 a.a.        Molecular weight: 17253.67 Da        Isoelectric Point: 6.6497

>AT279216 WP_160768170.1 NZ_CP123909:4416466-4416933 [Pseudomonas atacamensis]
MTTATPSAINLPVEREVKAAIEGQRALSAFLTTAFETQRIQIFDEQNEAHSVELPTSALRLLSDILAALAQGNAVKVVPI
HAELTTQEAADLLNVSRPHMIKLLERGEISYHKTGKHRRVRFADLMEYKTRRDTASEQAMTLLAEQAQALRTGYE

Download         Length: 468 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References