279213

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 2772506..2772956 Replicon chromosome
Accession NZ_CP123909
Organism Pseudomonas atacamensis strain MGMM4

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QG303_RS12625 Protein ID WP_240995584.1
Coordinates 2772735..2772956 (+) Length 74 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QG303_RS12620 Protein ID WP_281121527.1
Coordinates 2772506..2772697 (+) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QG303_RS12595 (QG303_12595) 2767650..2768447 + 798 WP_024013146.1 ATP-binding cassette domain-containing protein -
QG303_RS12600 (QG303_12600) 2768441..2769268 + 828 WP_024013147.1 ABC transporter permease -
QG303_RS12605 (QG303_12605) 2769265..2770032 + 768 WP_281121390.1 phosphonate ABC transporter, permease protein PhnE -
QG303_RS12610 (QG303_12610) 2770211..2771890 + 1680 WP_024013149.1 MFS transporter -
QG303_RS12615 (QG303_12615) 2771999..2772217 + 219 WP_024013150.1 hypothetical protein -
QG303_RS12620 (QG303_12620) 2772506..2772697 + 192 WP_281121527.1 stability determinant Antitoxin
QG303_RS12625 (QG303_12625) 2772735..2772956 + 222 WP_240995584.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-72)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8440.86 Da        Isoelectric Point: 11.2155

>T279213 WP_240995584.1 NZ_CP123909:2772735-2772956 [Pseudomonas atacamensis]
IDYVEQRNTVASVALHQKISAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYRVTDHIKILTLLHARKKYP

Download         Length: 222 bp

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7217.12 Da        Isoelectric Point: 4.3855

>AT279213 WP_281121527.1 NZ_CP123909:2772506-2772697 [Pseudomonas atacamensis]
ITTFGLIVSDFETEEEAADYDLWYRAKVQAALDDPRPPIPHDEAMVLLGQMLEERRKNRRAAG

Download         Length: 192 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References