Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-CC2985
Location 2599013..2599541 Replicon chromosome
Accession NZ_CP123909
Organism Pseudomonas atacamensis strain MGMM4

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QG303_RS11890 Protein ID WP_281121329.1
Coordinates 2599251..2599541 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A341F4V9
Locus tag QG303_RS11885 Protein ID WP_016770738.1
Coordinates 2599013..2599258 (+) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QG303_RS11870 (QG303_11870) 2595392..2595580 + 189 WP_281121642.1 hypothetical protein -
QG303_RS11875 (QG303_11875) 2595815..2597851 + 2037 WP_281121327.1 Ig-like domain-containing protein -
QG303_RS11880 (QG303_11880) 2598311..2598670 + 360 WP_281121328.1 hypothetical protein -
QG303_RS11885 (QG303_11885) 2599013..2599258 + 246 WP_016770738.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
QG303_RS11890 (QG303_11890) 2599251..2599541 + 291 WP_281121329.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QG303_RS11900 (QG303_11900) 2599743..2601659 - 1917 WP_281121520.1 selenocysteine-specific translation elongation factor -
QG303_RS11905 (QG303_11905) 2601656..2603068 - 1413 WP_281121330.1 L-seryl-tRNA(Sec) selenium transferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

Antitoxin ParD

(8-78)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11068.63 Da        Isoelectric Point: 7.2407

>T279212 WP_281121329.1 NZ_CP123909:2599251-2599541 [Pseudomonas atacamensis]
MAEYRLTPAAEADLEAIWTYTAQQWGLHQANRYIDILTASFEQLADRPKTAPACDAIRPGYRRCSVESHVIYFRITAYGI
AIIRILHDRMEAQRNL

Download         Length: 291 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9354.43 Da        Isoelectric Point: 7.3193

>AT279212 WP_016770738.1 NZ_CP123909:2599013-2599258 [Pseudomonas atacamensis]
MATVRKTITVTDQQDHWIKAQIEAGHYTNDSEYIRDLIRREQERNAELETVRAALREGESSGAPRPFDADAFKKRMLRAH
G

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A341F4V9

References