Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /BrnT(toxin) |
Location | 1963926..1964418 | Replicon | chromosome |
Accession | NZ_CP123843 | ||
Organism | Agrobacterium fabrum strain N40/94 |
Toxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | G6L42_RS09680 | Protein ID | WP_080807612.1 |
Coordinates | 1964149..1964418 (-) | Length | 90 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | G6L42_RS09675 | Protein ID | WP_080807616.1 |
Coordinates | 1963926..1964168 (-) | Length | 81 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
G6L42_RS09655 (G6L42_009655) | 1959176..1960168 | + | 993 | WP_080811835.1 | glutathione S-transferase family protein | - |
G6L42_RS09660 (G6L42_009660) | 1960186..1960677 | - | 492 | WP_010972183.1 | NUDIX domain-containing protein | - |
G6L42_RS09665 (G6L42_009665) | 1960744..1961694 | + | 951 | WP_080807622.1 | metallophosphoesterase | - |
G6L42_RS09670 (G6L42_009670) | 1961899..1963608 | - | 1710 | WP_080807619.1 | 2-isopropylmalate synthase | - |
G6L42_RS09675 (G6L42_009675) | 1963926..1964168 | - | 243 | WP_080807616.1 | CopG family antitoxin | Antitoxin |
G6L42_RS09680 (G6L42_009680) | 1964149..1964418 | - | 270 | WP_080807612.1 | BrnT family toxin | Toxin |
G6L42_RS09685 (G6L42_009685) | 1964453..1965631 | - | 1179 | WP_080807609.1 | benzoate/H(+) symporter BenE family transporter | - |
G6L42_RS09690 (G6L42_009690) | 1965894..1966976 | + | 1083 | WP_080807606.1 | esterase-like activity of phytase family protein | - |
G6L42_RS09695 (G6L42_009695) | 1967049..1967693 | - | 645 | WP_080807603.1 | NrsF family protein | - |
G6L42_RS09700 (G6L42_009700) | 1967690..1968238 | - | 549 | WP_080728775.1 | sigma-70 family RNA polymerase sigma factor | - |
G6L42_RS09705 (G6L42_009705) | 1968424..1968681 | + | 258 | WP_080807599.1 | pentapeptide MXKDX repeat protein | - |
G6L42_RS09710 (G6L42_009710) | 1968788..1969369 | - | 582 | WP_006314627.1 | ATP-dependent Clp protease proteolytic subunit | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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