Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 720170..720704 Replicon chromosome
Accession NZ_CP123783
Organism Minwuia sp. IMCC3077

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QGV02_RS03530 Protein ID WP_281018586.1
Coordinates 720405..720704 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag QGV02_RS03525 Protein ID WP_281018585.1
Coordinates 720170..720415 (+) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QGV02_RS03505 715550..716464 + 915 WP_281018581.1 alpha/beta hydrolase -
QGV02_RS03510 716504..717208 - 705 WP_281018582.1 SDR family oxidoreductase -
QGV02_RS03515 717246..718484 - 1239 WP_281018583.1 MFS transporter -
QGV02_RS03520 718481..720016 - 1536 WP_281018584.1 acetyl-CoA acetyltransferase -
QGV02_RS03525 720170..720415 + 246 WP_281018585.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
QGV02_RS03530 720405..720704 + 300 WP_281018586.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QGV02_RS03535 720741..721892 - 1152 WP_281018587.1 NADH:flavin oxidoreductase/NADH oxidase -
QGV02_RS03540 721904..722707 - 804 WP_281018588.1 SDR family oxidoreductase -
QGV02_RS03545 722789..723637 - 849 WP_281018589.1 3-hydroxyacyl-CoA dehydrogenase family protein -
QGV02_RS03550 723799..724065 + 267 WP_281018590.1 hypothetical protein -
QGV02_RS03555 724158..724391 + 234 WP_281018591.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(8-94)

Antitoxin

Antitoxin ParD

(1-80)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11487.98 Da        Isoelectric Point: 6.4822

>T279152 WP_281018586.1 NZ_CP123783:720405-720704 [Minwuia sp. IMCC3077]
MPDSDPGYRLSPLARTDLEDIWRYTFENWSLEQADRYHGTIMTAILALADGSVSGSRADVREGYFKLRAGSHVLFYRKAD
TTLEIMRILHQRMDVDRHL

Download         Length: 300 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8888.82 Da        Isoelectric Point: 5.0981

>AT279152 WP_281018585.1 NZ_CP123783:720170-720415 [Minwuia sp. IMCC3077]
MARNTSVSLGDHFTGFIDSQVRDGRYGSASDVVRAGLRLLEEHETRVRALQNALIAAEESGPPEAFDSDAFLEEMRKKHA
G

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References