Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 406982..407516 Replicon chromosome
Accession NZ_CP123781
Organism Minwuia sp. IMCC3009

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QGV55_RS01800 Protein ID WP_281018586.1
Coordinates 406982..407281 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag QGV55_RS01805 Protein ID WP_281018585.1
Coordinates 407271..407516 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QGV55_RS01775 403295..403528 - 234 WP_281018591.1 hypothetical protein -
QGV55_RS01780 403621..403887 - 267 WP_281018590.1 hypothetical protein -
QGV55_RS01785 404049..404897 + 849 WP_281018589.1 3-hydroxyacyl-CoA dehydrogenase family protein -
QGV55_RS01790 404979..405782 + 804 WP_281018588.1 SDR family oxidoreductase -
QGV55_RS01795 405794..406945 + 1152 WP_281018587.1 NADH:flavin oxidoreductase/NADH oxidase -
QGV55_RS01800 406982..407281 - 300 WP_281018586.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QGV55_RS01805 407271..407516 - 246 WP_281018585.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
QGV55_RS01810 407670..409205 + 1536 WP_281018584.1 acetyl-CoA acetyltransferase -
QGV55_RS01815 409202..410440 + 1239 WP_281018583.1 MFS transporter -
QGV55_RS01820 410478..411182 + 705 WP_281018582.1 SDR family oxidoreductase -
QGV55_RS01825 411222..412136 - 915 WP_281018581.1 alpha/beta hydrolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(8-94)

Antitoxin

Antitoxin ParD

(1-80)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11487.98 Da        Isoelectric Point: 6.4822

>T279150 WP_281018586.1 NZ_CP123781:c407281-406982 [Minwuia sp. IMCC3009]
MPDSDPGYRLSPLARTDLEDIWRYTFENWSLEQADRYHGTIMTAILALADGSVSGSRADVREGYFKLRAGSHVLFYRKAD
TTLEIMRILHQRMDVDRHL

Download         Length: 300 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8888.82 Da        Isoelectric Point: 5.0981

>AT279150 WP_281018585.1 NZ_CP123781:c407516-407271 [Minwuia sp. IMCC3009]
MARNTSVSLGDHFTGFIDSQVRDGRYGSASDVVRAGLRLLEEHETRVRALQNALIAAEESGPPEAFDSDAFLEEMRKKHA
G

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References